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NextFlow learning and development repo
Nextflow 82.45%
Shell 17.55%
rnaseq_nextflow's Introduction
- I am using this repository as a training environment to learn NextFlow
- Learn how to use NextFlow
- This pipeline is designed to run on the QMUL HPC (Apocrita)
- Pipeline:
- Subset FASTQ files down to 1M reads
- Run FASTQC on subsetted FASTQ files
- Run TRIMGALORE on full FASTQ files
- Run FASTQC on trimming output
- Run MULTIQC on outputs from FASTQC on subsetted reads and trimmed reads
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