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3D image classification using CNN (Convolutional Neural Network)

Python 100.00%

cnn 3d mri medical tensorflow neural-network dti nifti convolutional-neural-networks classification

cnn-3d-images-tensorflow's Introduction

CNN 3D Images using Tensorflow

Goal: MRI classification task using CNN (Convolutional Neural Network)
Code Dependency: Tensorflow 1.0, Anaconda 4.3.8, Python 2.7
Difficulty in learning a model from 3D medical images
1. Data size is too big. e.g., 218x182x218 or 256x256x40
2. There is only limited number of data. In other words, training size is too small.
3. All image looks very similar and only have subtle difference between subjects.
Possible solutions
1. Be equipped with good machine especially the RAM
2. Downsample images in the preprocessing
3. Data augmentation e.g., rotate, shift, combination
4. Transfer learning

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tangxiaohuihui jiandanjinxin shenruihan swarupg1 hymicrobusai nickkimer ieee820 kcho aolansili ee-shawn sircamp adam1brownell dilaw2007 keniuniu linson7017 chansongj jameskry esterified jiamingglyy stellaxiang cynthia0629 haroldss mamilat ghalib-bello philtaylor50 mpsampat lbnphoenix kambeitzlab young77 joulemusic kruthikakr swordsonzhang drboltzmann litiyao nguyenhongchau bonbonecho maplewzx tzirakis skoo9500 btujack wyf1995 mingxingle 845968074 transconnectome agarwal-akash 491506870 red-lighting zddzxxsmile megan0615 zilinyan prativa medical-images-process edolele chengzhenfengdd xzllxls xiaochengcike huoqiang1993 hancanzhu ning3m jumpingyu zhanglang1860 jingmingcn newstart2019 yuhonghong7035 chuang327 woooodbond junxyu hhy5277 zibagandomkar curiousninen returnmax yeefeizzz liuwenhaha madhukar-m-rao thanhitpro royalswz tommylitlle xidianxiaofeixian htylab neu-tangjr litingfeng00 marceau-stack nicolinhainc dixonhank wikiviggy deeplearning-machinelearning bruce-xie bytesnomad ntongha1 yeyuweilan amancodeblast akashindani ymk1933230135 tanmoy-in pakchoi123 asher3708 chencara cnn-multi-scale-transfer-learning ldachuan 123rugby

cnn-3d-images-tensorflow's Issues

Warning: I think these codes are incomplete and lack a function

Many people mentioned this problem that lacked a function called get_data_MRI.

Can I have your data?

Sorry,I don't know how to use your code.
I don't kmow what's your data looks like?It has a txt,some3D images?
Could I use your date to run this code?

About the form of the imput data

the form of the imput data is the original MRI data or the MRI data that the ROI was segmented？

the form of data and labels

I want to know the form of your data and labels. Can you please take a picture or list it?

FC

I want to know how you choose parameters fo FC layers.

Help

Hi, I am trying to run your code, but didn't find get_data_MRI function. Can you please share it.

I do not wanna your MRI data. I am just learing the application fo 3D-CNN. But I am not experienced.
So, Can you give me the code about the "get_data_MRI" without your critical. And at least incluing the format(input, output), code of batch-generate and so on.
I would appreciate it if you could share this code. Looking froward to you reply.

What is "get_data_MRI"

In CNN-3D-images-Tensorflow, where "get_data_MRI" comes from?

Hello, I have some question about your simple.

hello, I want to build a model to put my MRI image in your simple, my question is how to import my image ?Can you teach me?

Can you upload a trained network, rather than just the code?

Hello! I have my own 3D MRI images in NIFTI format that I would like to classify and I would be very grateful if you could upload a trained network that I can feed my own images into rather than just the code to create the network (which does look good, though, I've used similar code in the past). Is this possible?