Giter VIP home page Giter VIP logo

uq's People

Contributors

johnlonginotto avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar

Forkers

kgerhardt

uq's Issues

OverflowError: integer 510 does not fit 'uint8_t'

Hello,

I am exploring uQ tool for fastq compression and I got this error at the first run. The version I used is the one at commit 2aef5e2 (the latest)

Pass 2 of 4: Now QNAME delimiters are known, QNAMEs are being analysed. (98.47%)
Optimal encoding method for delimited data in QNAME determined! (0.369165285428 minutes)
    - Column 3 is type mapping stored as uint8
    - Column 3 is type integers stored as uint16
    - Column 3 is type integers stored as uint16

Traceback (most recent call last):
  File "/u/creggian/programmi/uq/uq.py", line 707, in <module>
    if variable_read_lengths: arrays = encoder_variable(status.total,dna_bases,quals,N_qual,dna_columns_needed,qual_columns_needed,status,args.input,bits_per_base,bits_per_quality)
  File "/u/creggian/programmi/uq/uq.py", line 242, in encoder_variable
    dna_array[row][dna_byte_position]   = temp_dna  + (variable_read_lengths << (dna_bits_done))  ; dna_byte_position -= 1
OverflowError: integer 510 does not fit 'uint8_t'

Can you help me in this direction? And is this project still mantained?

Thanks
Claudio

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.