johnlonginotto / uq Goto Github PK
View Code? Open in Web Editor NEWEncode FASTQ files to be much smaller, both compressed and uncompressed.
Encode FASTQ files to be much smaller, both compressed and uncompressed.
Hello,
I am exploring uQ tool for fastq compression and I got this error at the first run. The version I used is the one at commit 2aef5e2 (the latest)
Pass 2 of 4: Now QNAME delimiters are known, QNAMEs are being analysed. (98.47%)
Optimal encoding method for delimited data in QNAME determined! (0.369165285428 minutes)
- Column 3 is type mapping stored as uint8
- Column 3 is type integers stored as uint16
- Column 3 is type integers stored as uint16
Traceback (most recent call last):
File "/u/creggian/programmi/uq/uq.py", line 707, in <module>
if variable_read_lengths: arrays = encoder_variable(status.total,dna_bases,quals,N_qual,dna_columns_needed,qual_columns_needed,status,args.input,bits_per_base,bits_per_quality)
File "/u/creggian/programmi/uq/uq.py", line 242, in encoder_variable
dna_array[row][dna_byte_position] = temp_dna + (variable_read_lengths << (dna_bits_done)) ; dna_byte_position -= 1
OverflowError: integer 510 does not fit 'uint8_t'
Can you help me in this direction? And is this project still mantained?
Thanks
Claudio
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