Giter VIP home page Giter VIP logo

kccg / seave Goto Github PK

View Code? Open in Web Editor NEW
15.0 14.0 3.0 21.47 MB

Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling from single labs to multi-institution scale.

Home Page: https://seave.public.garvan.org.au/

License: Other

PHP 16.90% HTML 72.37% CSS 2.99% JavaScript 7.12% Perl 0.62%
web genetics genomics clinical wgs sequencing php html gemini bedtools

seave's People

Contributors

drmjc avatar velnz avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

seave's Issues

Databases do not appear

First of all, great work with seave, it is a great tool.
In my group we have make an amazon server with the seave image (going step by step in the installation process as it is marked in the administration manual). We can upload gemini db without any problems, can create/change users. But the databases do not appear in the list, even if the user has permisions for the group where the database is in. Furthermore the administrator, in the data management menu can see them (the one we have uploaded and the one that comes with the image), and can delete them, etc, but we cannot access them, nor work with them (even the one that comes with the image do not appear in the databases rows, even with the administrator account). We cant make new groups too.
Thansk for your time

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.