Topic: sequencing Goto Github
Some thing interesting about sequencing
Some thing interesting about sequencing
sequencing,SPAdes Genome Assembler
Organization: ablab
Home Page: http://ablab.github.io/spades/
sequencing,Structural variant toolkit for VCFs
User: acenglish
sequencing,Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Organization: biocommons
Home Page: https://hgvs.readthedocs.io/
sequencing,Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
Organization: bitfieldaudio
Home Page: https://bitfieldaudio.com
sequencing,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
sequencing,V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Organization: cbg-ethz
Home Page: https://cbg-ethz.github.io/V-pipe/
sequencing,[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Organization: chanzuckerberg
sequencing,Differential abundance (DA) and correlation analyses for microbial absolute abundance data
User: frederickhuanglin
Home Page: https://www.nature.com/articles/s41467-020-17041-7
sequencing,Data intensive science for everyone.
Organization: galaxyproject
Home Page: https://galaxyproject.org
sequencing,Bam Error Stats Tool (best): analysis of error types in aligned reads.
Organization: google
sequencing,DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Organization: google
sequencing,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
sequencing,:rocket: A sequencing simulator
User: hadrieng
Home Page: https://insilicoseq.readthedocs.io
sequencing,A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom actions.
User: ideoforms
Home Page: http://ideoforms.github.io/isobar/
sequencing,A complete framework for data control and composition in the vvvv visual programming environment.
Organization: kairosresearchlab
sequencing,CLI tool for flexible and fast adaptive sampling on ONT sequencers
Organization: looselab
Home Page: https://looselab.github.io/readfish/
sequencing,MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Organization: milaboratory
Home Page: https://mixcr.com
sequencing,Genomics Extension for SQLite
User: mlin
sequencing,Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Organization: nextstrain
Home Page: https://clades.nextstrain.org
sequencing,Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
User: nickjcroucher
Home Page: http://nickjcroucher.github.io/gubbins/
sequencing,Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Organization: opengene
sequencing,An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Organization: opengene
sequencing,Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Organization: opengene
sequencing,Analysis Pipeline for Single Cell ATAC-seq
User: r3fang
sequencing,Discovering known and novel miRNAs from small RNA sequencing data
Organization: rajewsky-lab
sequencing,An interactive web tool for quality control of DNA sequencing data
User: robertaboukhalil
Home Page: https://fastq.bio
sequencing,Antimicrobial Resistance Identification By Assembly
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/ariba/
sequencing,Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Artemis
sequencing,Get assembly statistics from FASTA and FASTQ files
Organization: sanger-pathogens
sequencing,A tool to circularize genome assemblies
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/circlator/
sequencing,Rapid large-scale prokaryote pan genome analysis
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Roary
sequencing,Finds SNP sites from a multi-FASTA alignment file
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/snp-sites/
sequencing,FASTQ compression
User: shubhamchandak94
sequencing,SortMeRNA: next-generation sequence filtering and alignment tool
Organization: sortmerna
Home Page: https://sortmerna.readthedocs.io
sequencing,:rocket: seqfu - Sequece Fastx Utilities
User: telatin
Home Page: https://telatin.github.io/seqfu2
sequencing,A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
User: tmhglnd
Home Page: http://www.timohoogland.com/mercury-livecoding
sequencing,BAM Statistics, Feature Counting and Annotation
User: tobiasrausch
Home Page: https://www.gear-genomics.com/alfred/
sequencing,Wally: Visualization of aligned sequencing reads and contigs
User: tobiasrausch
sequencing,A repository for setting up a RNAseq workflow
User: twbattaglia
sequencing,UGENE is free open-source cross-platform bioinformatics software
Organization: ugeneunipro
Home Page: http://ugene.net
sequencing,Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
User: verisimilitudex
sequencing,Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Organization: wurmlab
Home Page: https://sequenceserver.com
sequencing,Simple & Efficient data access for Scala and Scala.js
Organization: xebia-functional
Home Page: https://xebia-functional.github.io/fetch/
sequencing,Accurate and flexible loops calling tool for 3D genomic data.
User: yaqiangcao
Home Page: https://yaqiangcao.github.io/cLoops/
sequencing,Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
User: zjufanlab
Home Page: https://www.sciencedirect.com/science/article/pii/S2589004220300663
sequencing,Polyrhythmic Sequencer library for Web Audio API.
User: zya
Home Page: http://zya.github.io/beet.js
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