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ncs

Noise Correction Algorithm for sCMOS cameras

neural-style

Torch implementation of neural style algorithm

nndetection

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

numan

Numerosity analysis: code to help identify the neural correlates of numerosity in zebrafish

numerosity

oasis_matlab

opencentroidnet

OpenCentroidNet

presentations

📣 Material for Nebari-adjacent tutorials and talks

psd95_segmentation

pwreg

Piecewise registration of biological images

pycro-manager

Python control of micro-manager for customized data acquisition

qosf.org

Web portal of Quantum Open Source Foundation

rastermap

A multi-dimensional embedding algorithm

remotepresence

Remote presence with the Oculus Rift DK1 headset, Arduino, stereo webcams and a python interface.

reproducible-data-science

Tutorials on creating a reproducible and maintainable data science project

rtd-tutorial

In this tutorial you will create a documentation project on Read the Docs by importing an Sphinx project from a GitHub repository, tailor its configuration, and explore several useful features of the platform.

segmentation_models_3d

Set of models for segmentation of 3D volumes

setup.py

📦 A Human's Ultimate Guide to setup.py.

snt

The ImageJ framework for semi-automated tracing and analysis of neurons

spim-gcmp-processing

SPIM-GCaMP-CaImAn data pipeline

sprinkle

suite2p

Tools for processing 2P recordings

synapse-redistribution

Analysis and figure code from Dempsey et al. 2020

synapse-segmentation

Automatic synapse classification n fluorescence images

tifffile

Deprecated: Read and write image data from and to TIFF files.

tutorial-about-3d-convolutional-network

Tutorial about 3D convolutional network

tutorial-yaml-wandb

Notes on wandb : Organize your experiments using yaml and wandb

tutorials

MONAI Tutorials

ugpy

Some code meant to replace the undergrads ;)

ugpy-neurofix