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Network_humanpop_SV

Scripts used in "Similarity-based analysis of allele frequency distribution among multiple populations identifies adaptive genomic structural variants"

Marie Saitou, Naoki Masuda, Omer Gokcumen Molecular Biology and Evolution, msab313, https://doi.org/10.1093/molbev/msab313 Published: 28 October 2021"

calculate_mu_1000_genomes_project.py

Scripts used to calculate MU from the 1000 Genome phase 3 datasets.

calculate_mu_alkan2.py

Scripts used to calculate MU from Alkan et al (umpublished) datasets.

calculate_mu_simulated_input_output_specified.py

Scripts used to calculate MU from SLiM-simulated datasets.

cnv.sel.realdemo.m1e-5.sel1.005.slim

SLiM (https://messerlab.org/slim/) scripts used for the population genetics simulation.

script_MBE.r

R scripts used to generate figures in the main texts and in the supplementaly materials

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