Comments (5)
annihei
commented on June 12, 2024
1
Thanks!
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mcanouil
commented on June 12, 2024
I will check, I might have get the condition the wrong way.
It should be an easy/quick fix.
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mcanouil
commented on June 12, 2024
@annihei Are you sure? From my code, for all variants with R2/INFO different from 1, the info_type is added.
See https://github.com/mcanouil/eggla/blob/main/R/run_eggla_gwas.R#L534-L563.
Never mind, I saw where the condition was off.
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mcanouil
commented on June 12, 2024
v0.18.1 will be available soon with the fix.
Thanks for noticing and reporting this.
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mcanouil
commented on June 12, 2024
@annihei @burrowsk v0.18.1 is available. The Docker image and the updated documentation website will be online within the next hour.
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Related Issues (20)
- Replace slopes_dt with aucs_dt in outlier removal [run_eggla_lmm()]
- Inconsistent use of vep and vep_file in run_eggla_gwas() HOT 1
- Title of residual plots in run_eggla_lmm()
- New version of run_eggla_gwas not working HOT 16
- Ensure GWAS output is consistent with analysis plan HOT 6
- run_eggla_gwas: Error in colnames HOT 7
- AP/AR BMI predicted for all values of covariate within individuals HOT 16
- `performance::model_performance()` exibits a log-likelihood warning for AIC/BIC HOT 2
- Add AP and AR in addition to slopes and AUCs for GWAS
- Update knots from 2,8,12 to 1,8,12
- Check that all diagnostics figures/tables to the output of `run_eggla_lmm()` HOT 2
- Outlier plot legend getting mixed HOT 2
- Error in run_eggla_gwas when use_info=TRUE HOT 8
- All parameters correlations
- Incorrect parameter correlations HOT 4
- Release `eggla` `v1.0.0` HOT 5
- HWE_P in run_eggla_gwas() results inconsistent with analysis plan HOT 6
- N and EAF definition HOT 10
- Update default value for compute_apar function HOT 1
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