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I am quite interested in the method and would like to repeat the analysis to further understand it.
I found the normalized CPTAC data from the original publication, but I am not sure whether that was what you had as input.
Would it be possible for you to share the
CPTAC_GBM_proteomics.RData and the CPTAC_GBM_phosphoProteomics.RData
so I know how the input data was constructed?
Thanks a lot!
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