This repository consist of codes and documents used and shared with the group. Some of the results are also in results directory. All the results are stored on Uppmax:
/crex/proj/snic2020-16-70/private/SMS_4947_20_CVA24v_receptor/
Delivery directory on Uppmax is this repository.
Intermediate directory is the intermidate files used in this project which is located on no-backup disk.
PLEASE NOTE THAT NBIS RECEIVED BAM FILES FROM THE USER. NBIS DID NOT RUN ANY ALIGNMENT AND DID NOT HANDEL THE RAW READS.