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New England Biolabs Inc.'s Projects

ngslite icon ngslite

Light-weight functions for next-generation sequencing (NGS) data analysis

opentrons icon opentrons

Collection of scripts which can be used in relation to Opentrons OT-2 Liquid Handling Robot

paperclip icon paperclip

Easy file attachment management for ActiveRecord

picard_bcl_to_fastq icon picard_bcl_to_fastq

Demultiplexes a MiSeq, NextSeq or HiSeq run using Picard's IlluminaBasecallsToFastq

pilon icon pilon

Pilon is an automated genome assembly improvement and variant detection tool

planemo icon planemo

Command-line utilities to assist in developing tools for the Galaxy project.

plate-map icon plate-map

A flexible tool for defining the contents of 96 well plates.

porecov icon porecov

SARS-CoV-2 workflow for nanopore sequence data

poreplex icon poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

seq-results-deprecated icon seq-results-deprecated

Deprecated: Web interface to manage a database of sequence results (merged into ngs-aggregate-results)

simple_xlsx_reader icon simple_xlsx_reader

Ruby xlsx reader to parse cell values into plain ruby primitives and dates/times.

unclepy icon unclepy

A parser for Unchained Labs Uncle HDF5 binary files written in Python.

uncleshiny icon uncleshiny

A dashboard for Unchained Labs Uncle data visualization written in R using Shiny.

varskip icon varskip

VarSkip multiplex PCR designs for SARS-CoV-2 sequencing

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