Comments (4)
Hi Samuel,
Oops, yes, you are right. The declared file name does not match with the
one created.
I've just fixed it
http://docs.nextflow.io/en/latest/process.html#output-files
Thanks a lot for reporting that.
Cheers,
Paolo
On Fri, Aug 22, 2014 at 2:46 PM, Samuel Lampa [email protected]
wrote:
The code example in the output files section on the process page
https://github.com/nextflow-io/nextflow/blob/master/docs/process.rst#output-files
does not work.The code xample in question:
process randomNum {
output:
file 'result.txt' into numbers''' echo $RANDOM > result '''}
numbers.subscribe { println "Received: " + it.text }When executed, I get:
[14:45:53] ~/code/test/nextflow $ nextflow run randomnum.nf
Picked up _JAVA_OPTIONS: -Dawt.useSystemAAFontSettings=lcd_hrgb -Dswing.aatext=true -Dsun.java2d.xrender=true
N E X T F L O W ~ version 0.9.0[warm up] executor > local[47/583d32] Submitted process > randomNum (1)
ERROR: Error executing process > 'randomNum (1)'Caused by:
Missing output file: 'result.txt' expected by process: randomNum (1)Command executed:
echo $RANDOM > result
Command exit status:
0Command output:
(empty)Work dir:
/home/samuel/code/test/nextflow/work/47/583d329642c9b78d65fadaabf6637aTip: view the complete command output by changing to the process work dir and entering the command: 'cat .command.out'
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#11.
from nextflow.
Cool, thx!
from nextflow.
This was easy ;)
On Fri, Aug 22, 2014 at 3:03 PM, Samuel Lampa [email protected]
wrote:
Cool, thx!
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Reply to this email directly or view it on GitHub
#11 (comment).
from nextflow.
But fast fixed, nonetheless :)
from nextflow.
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