Comments (2)
alternative: remove samples with 0 counts, report the issue, and continue with analysis.
When all reads of all samples get lost the error message is actually informative.
Unfortunately cant reproduce this issue, waiting for it to appear again...
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Havent encountered that problem since, closing that issue for now.
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Related Issues (20)
- Documentation error: "Metadata files are not required to have additional metadata columns" HOT 1
- Strategy for PR2 species assignments HOT 7
- Error at process NFCORE_AMPLISEQ:AMPLISEQ:DADA2_QUALITY (FW) HOT 4
- Proposal: Blastn as an alternative classifier HOT 6
- Proposal: LULU ASV post-clustering curation HOT 9
- Proposal: Lowest Common Ancestor (LCA) module for assigning taxonomy HOT 2
- Proposal: Seqkit stats when demultiplexing HOT 2
- Proposal: Phyloseq R object creation at end of pipeline HOT 7
- Potential problem with demultiplexing and proposed solution HOT 1
- Add sintax support for all available databases HOT 1
- Error in command HOT 2
- RENAME_RAW_DATA_FILES - Process requirement exceeds available CPUs HOT 2
- Cutadapt failing due to renaming of files HOT 8
- Fasta input isnt compatible with most filters HOT 2
- Add vsearch uchime_denovo for chimera removal (or flagging) HOT 2
- A feature to remove taxa found in controls HOT 5
- Broken link in README.md HOT 2
- Adding gtdb release 214 & adding already downloaded database HOT 2
- CUTADAPT Workflow error HOT 5
- Requirement Exceeds Available Memory for CUTADAPT HOT 7
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