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jenmuell avatar jenmuell commented on July 3, 2024

I tried to fix this bug and could not recreate it on the dev or master branch. Therefore, I want to make sure, if I understood the problem correctly:

  • We assume a condition (treatment) with multiple different states (H20, drug1, drug2)
  • In the contrast sheet we are only interested in the comparison H20 vs drug1 and H20 vs drug2 but not drug1 vs drug2
  • The parameter differential_subset_to_contrast_samples will be set to true, which will remove all samples, which are not part of any comparison in the contrast sheet

from differentialabundance.

pinin4fjords avatar pinin4fjords commented on July 3, 2024

This issue has not had any activity since @jenmuell tried to assist in March having failed to replicate (thank you @jenmuell !).

Closing for now, but @aghr feel free to reopen if you can reproduce the error on dev and provide us with enough information to do so.

from differentialabundance.

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