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embc23-credible-twins-workshop

Content for the EMBC 2023 workshop

epithelial-modelling-platform

A web-based epithelial transport discovery, exploration and assembly tool

examples

exposure-mockups

Playing around with some ideas for new types of exposure pages

fair-dos-py-web

Testing out pyscript in the browser for a basic UI

fcepsilon.least_squares

Optimization of FCepsilonRI model using least_squares

flatmap-maker

Make anatomical flatmaps from SVG diagrams, Powerpoint slides, and other sources.

flattencellml

Code to flatten CellML 1.1 models into 1.0 models

fma-vagus-branching

Having a play at exploring the vagus branching structure in FMA

functional-connectivity

get-app

A fresh start on the web app demonstrating the services GMS-v2 provides.

get-configured

A CMake project to configure (some of) my projects and their dependencies.

get-libsbml

My clone of libSBML with tweaked CMake system to play nicer with get-configured.

get-model-server

get-simulator

get-sundials

A clone of the Sundials source with some tweaks to the cmake build system to play nice with my tools.

get-website

The website for my various GET and related projects (including CSim).

gms-v2

Reboot of the GET model server project

guccione-cube

A unit cube of material with the Guccione material law in CellML being stretched in OpenCMISS.

iron

Source code repository for OpenCMISS-Iron

journal-website

Source for journal.physiomeproject.org.

libcellml

My fork of the prime repository for libCellML development.

libcellml-python-utils

Andre playing with some Python scripts to do stuff with libCellML.

liboauthcpp

A pure C++ OAuth library

libomexmeta

libsedml

SED-ML library based on libSBML

llvm

LLVM compilation tools (including CLang)

manage

The main project for CMake-based OpenCMISS builds

mapclientplugins.eulerintegration1step

Developing my SED-ML based integration step for the DTP Computational Physiology module

mapclientplugins.meshgeneratorstep

MAP Client plugin for generating meshes via scripts using OpenCMISS-Zinc.