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mapclientplugins.sed-mlsourcestep

mapclientplugins.simulationtask2step

Developing another SED-ML based integration step for the DTP Computational Physiology module

mapclientplugins.simulationtask3step

DTP CompPhys MAP Client step

mapcore-documentation

model-assembly-service

A web-based application to compose model entities in the model recipe and serialize a CellML model

model-discovery-tool

A web-based epithelial transport discovery, exploration and recommendation tool

monodomain2d

n98-opencor-jupyter

Demonstration of using OpenCOR+Python to run a jupyter notebook to simulation the Noble 1998 model in CellML+SED-ML.

nephron-clone

Clone of my nephron repo in PMR

nih-response-15-002

numl

Numerical Markup Language

opencmiss-clang

The CLang compiler frontend

opencmiss-libcellml

The CellML API is an application programming interface and implementation for working with CellML models

opencmiss-libxml2

LibXML2 version 2.7.6 mods made to suit the needs of LibZinc

opencmiss-llvm

LLVM and CLang

opencmiss-zlib

zlib version 1.2.3 mods made to suit the needs of LibZinc

opencmiss.org

Source for the OpenCMISS website.

opencor

OpenCOR is a cross-platform modelling environment which can be used to organise, edit, simulate and analyse CellML files.

opencor-pysedml

Playing around with using python-libsedml inside OpenCOR.

original-opencor

OpenCOR is a cross-platform modelling environment which can be used to organise, edit, simulate and analyse CellML files.

osmium-website

Prototype website for the Osmium project.

physiome-coko

Journal article submission system for the Physiome Journal.

physiome-omex-utils

physiomed-api

pmr-571-modnk

Modular NK cell model

pmr-collect-cellml

pmr-to-modelexchange

Prototype method to export model information from PMR into the OmicsDI format needed for the initial ModeleXchange prototype.

pmr2userdocs

Repository for user documentations for the main instance of PMR2 - Auckland Physiome Repository.

pyomexmeta-binder-notebook

A demonstration of using pyomexmeta - the Python interface to libOmexMeta and the OMEX Metadata Specification.

rdfextractor

Simple metadata extractor for CellML models.