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Omer Faruk Gulban's Projects

birdbrain icon birdbrain

A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)

brainbox icon brainbox

BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.

bvbabel icon bvbabel

A lightweight Python library for reading & writing BrainVoyager file formats.

compoda icon compoda

Simplex space operations for compositional data implemented in Python.

duecredit icon duecredit

Automated collection and reporting of citations for used software/methods/datasets

flooding_brains icon flooding_brains

Creating mesmerizing brain animations by playing with geodesic distances.

fmriflows icon fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

graynet icon graynet

Subject-wise networks from structural MRI (thickness, gray matter density, curvature, gyrification)

heudiconv icon heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

iphigen icon iphigen

A command-line program for n-dimensional image enhancement and color balancing.

meso-mri icon meso-mri

Processing scripts for in vivo mesoscopic MRI at 0.35 mm isotropic resolution.

mp2ragelib icon mp2ragelib

MP2RAGE functions implemented in the way I understand better :)

nibabel icon nibabel

Python package to access a cacophony of neuro-imaging file formats

openmorph icon openmorph

Curated list of open-access databases with human structural MRI data

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