Giter VIP home page Giter VIP logo

cortical-auditory-atlas's Introduction

Human cortical (cytoarchitectonic) auditory atlas

Resources from our cortical auditory areas project that combines the gold-standard human histology images from JuBrain with state of the art in-vivo human magnetic resonance imaging (MRI) at ultra-high fields (7 Tesla). More specifically:

  1. We use 10 individual brains with cytoarchitectonically labelled areas to create a surface atlas that is optimized for the human auditory cortex. This atlas is shared here as a resource for fellow researchers:

  1. We make use of our atlas in combination with ultra-high field MRI to visualize the underlying in-vivo measurements such as myelination and tonotopy. This is done to exemplify a potential use case of our cytoarchitectonic atlas:

Atlas

Source data

Methods

  • We created our surface atlas by incorporating anatomical priors into standard curvature based alignment pipeline as implemented in BrainVoyager 21.4. See this document for the steps involved.

  • Since BrainVoyager is a commercial software which might not be available to all researchers, we share our resources here to help others implementing this method on their own. Feel free to ask questions on this repository's issues page.

Citation

If you benefit from this project in your own work, we would highly appreciate if you cite the following two articles:

  • Gulban, O.F., Goebel R., Moerel M., Zachlod D., Mohlberg H., Amunts K., De Martino F. (2020). Improving a probabilistic cytoarchitectonic atlas of auditory cortex using a novel method for inter-individual alignment. eLife. https://elifesciences.org/articles/56963

  • Zachlod, D., Rüttgers, B., Bludau, S., Mohlberg, H., Langner, R., Zilles, K., & Amunts, K. (2020). Four new cytoarchitectonic areas surrounding the primary and early auditory cortex in human brains. Cortex, 128, 1–21. https://doi.org/10.1016/j.cortex.2020.02.021

  • In addition, if you use the source data please cite the corresponding datasets indicated in the Source Data section above.

cortical-auditory-atlas's People

Contributors

ofgulban avatar

Stargazers

 avatar

Watchers

 avatar  avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.