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tcrseq_normalization_temp's Introduction

tcrseq_normalization

Testing pull request notifications

Test 2

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tcrseq_normalization_temp's Issues

Generate Spike dilution data

Need to generate spike dilution data for analysis

Vary gDNA concentration and use constant spike amount

  1. Control Experiment
    • Samples containing:
      • Five replicates of five different concentrations of gDNA (100ng, 200ng, 300ng, 400ng, 500ng)
      • Constant spike concentration of (TO DO: what is this value?)
    • Sample types:
      • Transgenic mouse 1
      • Transgenic mouse 2
      • 50-50 mix of Transgenic mice 1 and 2
      • WT mouse 1
    • 100 total samples

Analyze Flow Batch

WH to analyze the data DM provides in #6

Plot and perform linear regression on [gDNA] and total spike counts

  • Ho: Total spike counts do not differ depending on the [gDNA] in the sample
  • Ha: Total spike counts do differ depending on the [gDNA] in the sample

Repeat above, for individual spike counts

  • Ho: Individual spike counts do not differ depending on the [gDNA] in the sample
  • Ha: Individual spike counts do differ depending on the [gDNA] in the sample

Analyze Spike Dilution Data

Input

results from #4

Output

Plot and perform linear regression on [gDNA] and total spike counts

  • Ho: Total spike counts do not differ depending on the [gDNA] in the sample
  • Ha: Total spike counts do differ depending on the [gDNA] in the sample

Repeat above, for individual spike counts

  • Ho: Individual spike counts do not differ depending on the [gDNA] in the sample
  • Ha: Individual spike counts do differ depending on the [gDNA] in the sample

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