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macroresults's Issues

Improve foci position quantification

50% of bivalents have what appears to be a centromere orientation error.
tried in G males image and female image. ~50% of position measures are shitty.
This could be due to the print measure instead of the foci macro. I'm not sure how to verify the set aspects / properties.

SC and centromere overlap

If the SC doesn't touch the centromere -- length and position measures will be underestimated.
Think of a way to extend SC, perhaps with a spline. (wait for user, point and click spline then add)?

mark bad roi blobjects in roimanager

Write in an option in the editing section to mark the roi name to mark bad blobjects so that they can be disregarded.
Find a way to rewrite the name with the blobject number. This would require re-writing all blobject names and updating the roi manager. This might not be time effective.

estimate numbers

estimate the number of mice needed for quantification to get good biological estimates

'cleaved piece' excluding some SC pieces

In splineMeasure, the sc was selected, and name tested (this might not be nessecary), when the SC was a SC piece from Cleave function, the roiManager name was changed to 'NN cleaved piece'. It is missing the 'SC' that identifies all other SC pieces.
The name can be manually changed in Roi manger to pass through the regex with SC.
Change the macro code to rename cleaved pieces with SC.

UI for approving blobjects

Ideas for making the UI easier for approving and editing blobjects for producing high quality results.
-add obj_class text mask to image before approval
-mouseover text
-new zoomed in window with obj_class text

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