Comments (1)
Hi @tanyasarkjain,
Thanks for the question, you currently can't run CRISPRessoWGS on the entire genome. We recommend using VarScan or MuTect to scan the entire genome, and then specifying the identified regions to interrogate further with CRISPRessoWGS.
Thanks,
Cole
from crispresso2.
Related Issues (20)
- Alleles frequency table plot not generated HOT 3
- INDELs not recognized in the allele frequency table HOT 2
- CRIPSResso2 package not included in channel HOT 1
- How to solve Error 0? HOT 4
- Allele plot doesn't show base letter HOT 2
- Confused about sequence directions in prime editing parameters HOT 6
- ERROR: Offset around cut would be greater than reference sequence length. HOT 2
- CRISPRessoAgregate
- ERROR: NUMPY RELATED HOT 1
- A small mistake in 'CRISPResso_quantification_of_editing_frequency.txt' HOT 1
- Error message: alignment amplicon sequence to reads HOT 3
- High % of "AMBIGUOUS" reads – what are they? HOT 3
- Numpy Error HOT 6
- ERROR:HDR number in the plot not the same as the number in txt file HOT 2
- @N-yating If you pin to Python 2.7, it will install an old version of CRISPResso2. I would recommend using Python 3 for the most recent version of CRISPResso2.
- CRISPResso2 breaks because on lack of pin in matplotlib version HOT 3
- http://crispresso2.pinellolab.org/ - 502 Bad gateway HOT 2
- CRISPRessoAggregate failure HOT 2
- amplicon for Targeted Sequencing
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from crispresso2.