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Hi, I have been having some trouble getting ORA to run. I installed it on my cluster account using the cpan instructions, which put it into a local perl library (I don't have sudo authority). I have loaded the cluster's Bioperl, HMMER, and FASTA modules, which seem to be accessible. However whenever I run ORA with either the dog chromosome in the test file or my own fastas, it tells me that no hit is found for any gene. The input files run fine on a colleague's cluster, so I gather it must be something with the installation. Do you know what could be causing this error?

I have tried to download ora using the perl option and the make option, on 2 separate computers. When it goes to run t/test.t it fails, error message below. It still gives me this message even after adjusting the default softwares in the ORA.pm file as shown below (because that's what I have to type to run the executable from the PATH):
my $tfastx = 'tfastx36.exe';
my $fastx = 'fastx36.exe';

Use of unitialized value $fasta in -x at /mnt/c/Users/USER/ora/blib/Bio/ORA.pm, line 560
no FASTA hit for 10

t/test.t .. 1/1
Failed test 'Run test (dog chromosome 10)'
at t/test.t line 22.
Looks like you failed 1 test out of 1.
t/test.t .. Dubious, test returned 1 (wstat 256, 0x100)

Test Summary Report
t/test.t (Wstat: 256 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 1
Files=1, Testss=1, 103 wallclock secs (0.02 usr 0.03 sys + 1.17 cusr 0.89 cys=2.11 cpu)
result: FAIL
Failed 1/1 test programs. 1/1 subtests failed.
Makefile: 889: recipie for target 'test_dynamic' failed
make: *** [test_dynamic] Error 1