Comments (3)
FlukeAndFeather
commented on July 30, 2024
Based on test-match_names.R it looks like this is intended behavior. If that's the case, I suggest a more informative error message. But I don't think this should be the intended behavior because if there's one invalid taxon in a list of 1,000 taxa then I want a result with 999 matches. Otherwise I have to iteratively prune the invalid taxa until I get a good result.
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FlukeAndFeather
commented on July 30, 2024
Ah, this seems to be fixed by 4308b5f. I'm not seeing this error if I use the dev version of rotl. Any idea when this will be on CRAN?
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fmichonneau
commented on July 30, 2024
The latest version of rotl was just accepted on CRAN. Wait a few days for this new version to be available as binary and in a CRAN mirror near you. Thanks!
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Related Issues (20)
- tnrs_match_names and tol_induced_subtree only pull 250 species HOT 5
- Unable to recognise the tree labels/species name in the phylogenetic tree ??
- Adding annotation to trees is not possible because of the lack of edge lengths HOT 4
- tol_induced_subtree drops supporting studies information
- Tips not ordered alphabetically for polytomies HOT 2
- tnrs_match_names bug HOT 8
- use score from tnrs match names
- Error when a species not matched with `tnrs_match_names()` HOT 1
- Linux install HOT 2
- do_approximate_matching= TRUE not working on tnrs_match_names using multiple inputs HOT 2
- SSL certificate error HOT 2
- studies_find_trees returning NULL match_tree_ids HOT 1
- "The requested subtree is too large" -- possible to read in downloaded xml? HOT 2
- error with tnrs_match_names names list
- HTTP failure to connect to localhost HOT 1
- SSL certificate problem: certificate has expired HOT 1
- optimize dependencies
- `tnrs_match_names` does not return the best match in some cases HOT 4
- New bulk node_info and taxon_info api call options HOT 2
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