Not really an issue, just somewhere to store this.
Ape's read.tree cannot read this tree (will put more examples here as they arise):
study_id="pg_420"; tree_id="522"; git_sha="a2c48df995ddc9fd208986c3d4225112550c8452"
"((((Tinamiformes_292467:1.0E-22,((Apteryx_241840:1.0E-22)Apterygiformes_816668:0.03818,((Dromaius_283193:1.0E-22)Dromaiidae_283194:0.01843,(Casuarius_589156:1.0E-22)Casuariidae_589161:0.014445)Casuariiformes_589166:0.030882):0.00232,Tinamidae_292469:0.091284,(((Crypturellus_870604:0.061151,Tinamus_402450:0.042862):0.01736,(Eudromia_292460:0.084637,Nothoprocta_292463:0.080725):0.00491,(Crypturellus_870604:0.061151,Tinamus_402450:0.042862):0.01736,(Eudromia_292460:0.084637,Nothoprocta_292463:0.080725):0.00491)Tinamidae_292469:1.0E-22,((Crypturellus_870604:0.061151,Tinamus_402450:0.042862):0.01736,(Eudromia_292460:0.084637,Nothoprocta_292463:0.080725):0.00491)Tinamidae_292469:1.0E-22)Tinamiformes_292467:1.0E-22):0.001643,(Rhea_857863:1.0E-22)Rheiformes_829553:0.08311):0.011185,(Struthio_292466:1.0E-22)Struthioniformes_857847:0.068069)Palaeognathae_81443:0.055986,(((((Crax_979429:1.0E-22)Cracidae_109893:0.090261,(((Colinus_204725:1.0E-22)Odontophoridae_594197:0.099855,((Coturnix_1098759:0.066402,(Gallus_153562:1.0E-22)Phasianinae_51353:0.03635):0.010595,Rollulus_352754:0.068711)Phasianidae_728070:0.014614):0.008216,(Numida_684050:1.0E-22)Numididae_684043:0.044719):0.06343):0.013369,(Alectura_570959:0.03048,Megapodius_837567:0.029367)Megapodiidae_620981:0.069087)Galliformes_837585:0.032204,(((Oxyura_88395:0.040265,((Malacorhynchus_436831:0.04328,Anser_190884:0.022753):0.003531,((Aythya_693334:0.011903,Anas_765185:0.012596):0.023881,Biziura_432080:0.034803):0.003654):0.002077)Anatidae_765193:0.054998,(Anseranas_714466:1.0E-22)Anseranatidae_732899:0.048445):0.008696,(Chauna_241847:1.0E-22)Anhimidae_241842:0.057828)Anseriformes_241841:0.008393):0.044868,(((((((Turnix_365489:1.0E-22)Turniciformes_810755:0.18873,((Larus_887695:1.0E-22)Laridae_887693:0.032647,(Dromas_960243:1.0E-22)Dromadidae_960242:0.025419):0.015026):0.00881,((((Thinocorus_628492:1.0E-22)Thinocoridae_628493:0.053497,(Pedionomus_163950:1.0E-22)Pedionomidae_163951:0.04395):0.016681,((Jacana_332001:1.0E-22)Jacanidae_331999:0.05956,(Rostratula_5275:1.0E-22)Rostratulidae_5274:0.055239):0.009395):0.01752,(Arenaria_821756:1.0E-22)Scolopacidae_887699:0.046052):0.024302):0.009831,((Burhinus_261316:1.0E-22)Burhinidae_261310:0.045568,((Haematopus_193407:1.0E-22)Haematopodidae_675126:0.032531,(Charadrius_112946:0.02814,Phegornis_214795:0.026739)Charadriidae_313123:0.014782):0.014788):0.003951):0.01301,(((Cariama_966327:1.0E-22)Cariamidae_966325:0.064557,(((Herpetotheres_438656:0.013273,Micrastur_1015202:0.015684):0.017691,(Daptrius_438662:0.025422,Falco_786441:0.042045):0.020204)Falconidae_212186:0.033545,((Psittacidae_1020130:1.0E-22,(:1.0E-22,(Psittacus_332937:0.044181,(((Alisterus_682886:0.025857,Psittacula_1020126:0.02314):0.002518,Micropsitta_989086:0.035173):0.003373,(Chalcopsitta_276608:0.035748,Platycercus_512910:0.031536):0.003623):0.005708,Psittacus_332937:0.044181,(((Alisterus_682886:0.025857,Psittacula_1020126:0.02314):0.002518,Micropsitta_989086:0.035173):0.003373,(Chalcopsitta_276608:0.035748,Platycercus_512910:0.031536):0.003623):0.005708):1.0E-22,:1.0E-22,(Psittacus_332937:0.044181,(((Alisterus_682886:0.025857,Psittacula_1020126:0.02314):0.002518,Micropsitta_989086:0.035173):0.003373,(Chalcopsitta_276608:0.035748,Platycercus_512910:0.031536):0.003623):0.005708,Psittacus_332937:0.044181,(((Alisterus_682886:0.025857,Psittacula_1020126:0.02314):0.002518,Micropsitta_989086:0.035173):0.003373,(Chalcopsitta_276608:0.035748,Platycercus_512910:0.031536):0.003623):0.005708):1.0E-22)Psittacidae_1020130:1.0E-22,(Cacatua_619340:1.0E-22)Cacatuidae_512919:0.03402,(Psittacus_332937:0.044181,(((Alisterus_682886:0.025857,Psittacula_1020126:0.02314):0.002518,Micropsitta_989086:0.035173):0.003373,(Chalcopsitta_276608:0.035748,Platycercus_512910:0.031536):0.003623):0.005708):0.007079)Psittaciformes_1020133:0.080722,((Acanthisitta_1085741:1.0E-22)Acanthisittidae_901940:0.104596,(((Menura_73933:1.0E-22)Menuridae_73954:0.059299,((Climacteris_531218:1.0E-22)Climacteridae_73972:0.077503,((Malurus_901831:1.0E-22)Maluridae_901832:0.083712,((Corvus_952596:1.0E-22)Corvoidea_635217:0.044225,((Picathartes_699624:1.0E-22)Picathartidae_176465:0.053895,(((Bombycilla_613883:1.0E-22)Bombycillidae_613878:0.069549,((Sylvia_463177:1.0E-22)Sylviidae_259942:0.055851,(Turdus_568571:1.0E-22)Turdidae_96286:0.063024):0.00352):3.93E-4,(((Fringilla_28336:1.0E-22)Fringillidae_839319:0.036294,(Passer_515158:1.0E-22)Passeridae_1011209:0.040818):0.008852,((Ploceus_370815:1.0E-22)Ploceidae_1031977:0.023436,(Vidua_507121:1.0E-22)Estrildidae_507124:0.027999):0.005305)Passeroidea_176458:0.013079):0.009812):0.006319):0.009903):0.012328):0.006066):0.026149,((((Smithornis_622872:1.0E-22)Eurylaimidae_622873:0.054061,(Pitta_44875:1.0E-22)Pittidae_44873:0.07916):0.002972,Sapayoa_29742:0.064324):0.032117,(((Tyrannus_463185:0.042419,Mionectes_683046:0.038317):0.011208,(Pipra_872124:1.0E-22)Pipridae_881043:0.037734):0.028602,((Thamnophilus_799167:1.0E-22)Thamnophilidae_799152:0.061805,((Grallaria_1041027:1.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