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Comments (4)

linzhl1 avatar linzhl1 commented on June 11, 2024

I have extracted the sequence which caused the problem and ran it with the command:
cctyper q.fa test --prodigal meta -t 4
Here is the result.
test-DX2.zip

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jdwinkler-lanzatech avatar jdwinkler-lanzatech commented on June 11, 2024

I am also having a similar problem. Any workarounds available?

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Russel88 avatar Russel88 commented on June 11, 2024

Thank you for reporting, and providing a sequence which causes the bug.
A workaround for now shuold be to use the --skip_blast argument.
I will look into fixing the bug ASAP.

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Russel88 avatar Russel88 commented on June 11, 2024

Hi both

The bug is now fixed.
The new fixed version (1.6.4) is published on pip and can be upgraded like this:
python -m pip install cctyper --upgrade
It will be available on conda later today.

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