Comments (4)
I have extracted the sequence which caused the problem and ran it with the command:
cctyper q.fa test --prodigal meta -t 4
Here is the result.
test-DX2.zip
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I am also having a similar problem. Any workarounds available?
from crisprcastyper.
Thank you for reporting, and providing a sequence which causes the bug.
A workaround for now shuold be to use the --skip_blast argument.
I will look into fixing the bug ASAP.
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Hi both
The bug is now fixed.
The new fixed version (1.6.4) is published on pip and can be upgraded like this:
python -m pip install cctyper --upgrade
It will be available on conda later today.
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Related Issues (20)
- faa file of individual Cas proteins? HOT 7
- Multiple cctyper runs on the same contig giving different outputs? HOT 2
- Docker for cctyper HOT 1
- Problems running the program HOT 3
- add repeated sequence to repeats.fa HOT 1
- Expose minced options HOT 1
- CrisprCasTyper webserver HOT 1
- No database with conda install? HOT 2
- FileNotFoundError: blast.tab HOT 3
- Complete genome and draft genome HOT 2
- A complement to CRISRPRCasFinder or its own thing? HOT 1
- Execution against protein fasta and gff HOT 2
- Different results from CRISPR Cas typer web server and standalone version HOT 5
- Error when running cctyper: sed: cannot rename <output filename>/sed78a7GM: Permission denied HOT 2
- ![image](https://user-images.githubusercontent.com/121949837/212599561-d771b233-4bde-4850-8e5f-98a4164f78cb.png)
- Option to use Prodigal-gv
- Meaning of asterisk at the end of protein sequence HOT 1
- Creating empty files when there's no data HOT 1
- castyping.py having an issue with positional arguments. HOT 2
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