Comments (1)
Hi Fabien,
Yes you can. If you use conda you can find the db directory inside the conda environment. Then you simply add your repeats to the repeats.fa file (give them unique names, not overlapping with any of the other names). When you run cctyper with the conda environment it will then use the updated file.
However, the repeats.fa is only used if minced is not finding a CRISPR array near a cas operon. Therefore, it will most likely not make any difference for you
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