Comments (2)
Russel88
commented on June 12, 2024
Hi Nicholas,
The quick fix is the set the CCTYPER_DB shell variable to the path where the database is located. This should normally happen automatically, though.
export CCTYPER_DB="/path/to/conda/envs/cctyper/db
If the database isn't downloaded, for some reason, you can see here how to downlaod it manually:
https://github.com/Russel88/CRISPRCasTyper#when-installing-with-pip-you-need-to-download-the-database-manually
By the way, I can see you are using an old version of CCTyper. It might also help to recreate the conda env with the newest version (1.6.4).
Cheers,
Jakob
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nicholascdove
commented on June 12, 2024
The quick fix did it! Thanks!
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