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15418-vivek_krishnan

15418 Final Project Site

2019-snakemake-cli

Snakemake workflows as command line utilities

a-pytorch-tutorial-to-sequence-labeling

Empower Sequence Labeling with Task-Aware Neural Language Model | a PyTorch Tutorial to Sequence Labeling

a-systematic-bayesian-integration-of-epidemiological-and-genetic-data

A Systematic Bayesian Integration of Epidemiological and Genetic Data

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

aga

Annotated Genome Aligner

agentscript-models

Models created by the Concord Consortium using AgentScript

agentscripter

An htmlwidgets package allowing incorporation of Agentscript models into R Markdown documents

aging-study

Metadata and some analysis for the aging study

algorithm-problem-solutions

My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.

align

sequence alignment. global, local, glocal.

alignment.js

Javascript alignment viewer

ancestral_reconstruction

An example of ancestral reconstruction in HyPhy

andi

Efficient Estimation of Evolutionary Distances

antibodyome

A Galaxy based platform for analysing immunoglobulin repertoires

anvil

Artificial neural Networks for VIral Lineages

apples

distance based phylogenetic placement

audio_based_identification_beehive_states

augur

Pipeline components for real-time virus analysis

auspice

Web app for visualizing pathogen evolution

autoencoder

My bachelor thesis project titled "Protein Classification using Machine Learning Techniques" source code

awulff-pico-playground

RPi Pico Tests & Samples

bacteria

What started out as a terrain generator ended up being something akin to bacteria growing in a petri dish.

baltic

BALTIC - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation.

bam-readcount

count DNA sequence reads in BAM files

basis_functions_approach_to_gp

basta

Basic Sequence Taxonomy Annotator

bayes.js

An implementation of a small MCMC framework and some likelihood functions for doing Bayes stats in the browser.

bayesian-synthetic-likelihood

Code for the Bayesian Synthetic Likelihood paper by Price et al 2018 in the Journal of Computational and Graphical Statistics (volume 27, issue 1, pages 1-11)

bayesiantracker

Bayesian multi-object tracking