sdwfrost Goto Github PK

bbmisc

miscellaneous talks and small projects

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

beast-scala

An example of calling code in the BEAST library using Scala

beastlier

Co-estimation of phylogenetic and transmission trees in BEAST

beautiful-jekyll

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

beetl

BEETL

benchm-ml

A minimal benchmark for scalability, speed and accuracy of commonly used open source implementations (R packages, Python scikit-learn, H2O, xgboost, Spark MLlib etc.) of the top machine learning algorithms for binary classification (random forests, gradient boosted trees, deep neural networks etc.).

bfmem

Fast detection of maximal exact matches via fixed sampling of query k-mers and Bloom filtering of index k-mers

bgsa

A Bit-Parallel Global Sequence Alignment Toolkit for Multi-core and Many-core Architectures.

bhrk-2013

binarydist

bio

All-purpose bioinformatics container

bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

biobash

A collection of bash scripts for bioinformatics

bioext

A few handy bioinformatics tools not already within BioPython

bionode-watermill

💧Watermill: A Streaming Workflow Engine

bioseq.jl

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

biovec

A new approach for representing biological sequences

biovec-1

ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.

bitseq

BitSeq code

black-2018

Code supporting the importance sampling paper, Black 2018.

black-ross-2015

blca

bld-ode

Common Lisp numerical ordinary differential equation solvers

blog

Kontext | My blog on complex systems and datactivism through visualization.

bnpbdca

Bayesian non-parametric clustering algorithm for binary data

bpp

Estimate pairwise sequence distances by maximum likelihood

bstrlib

The Better String Library

bubble-bobble-clone

School assignment with Phaser 3