Comments (2)
Hi,
Many thanks for using export2graphlan.
The error you got is due to the fact that the input file is not a MetaPhlAn output, in particular the first column (the taxonomy), only contains the species levels and not the full taxonomy path. This makes not possible for export2graphlan to identify the biomarkers, and this is what causing the error.
If you can fix the input file by using the full path-taxonomy instead of only the species levels, that should fix the error you got.
Many thanks,
Francesco
from export2graphlan.
Hi Francesco,
Thank you for your reply and your help! I used the unmodified MetaPhlAn output table and it fixed the error.
Best wishes,
Charlotte
from export2graphlan.
Related Issues (4)
- Python 3 compatibility HOT 5
- Compatibility issues MetaPhlan3 HOT 1
- export2graphlan error HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from export2graphlan.