Comments (2)
Hi, can you please provide the full command and also the input file(s) you're using?
from export2graphlan.
export2graphlan.py --skip_rows 1,2 -i taxonomy.tsv \
--tree temp/merged_abundance.tree.txt \ --annotation temp/merged_abundance.annot.txt \ --most_abundant 1000 --abundance_threshold 20 --least_biomarkers 10 \ --annotations 3,4 --external_annotations 7
Traceback (most recent call last):
File "/home/meta/miniconda2/envs/meta/bin/export2graphlan.py", line 768, in
main()
File "/home/meta/miniconda2/envs/meta/bin/export2graphlan.py", line 511, in main
lefse_input = DataMatrix(args.lefse_input, args)
File "/home/meta/miniconda2/envs/meta/bin/hclust2.py", line 149, in init
index_col = self.args.sname_row if self.args.sname_row > -1 else None
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 678, in parser_f
return _read(filepath_or_buffer, kwds)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 446, in _read
data = parser.read(nrows)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 1036, in read
ret = self._engine.read(nrows)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 1886, in read
values = data.pop(self.index_col[i])
IndexErrotaxonomy.xlsx
from export2graphlan.
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from export2graphlan.