Giter VIP home page Giter VIP logo

Comments (2)

fasnicar avatar fasnicar commented on June 20, 2024

Hi, can you please provide the full command and also the input file(s) you're using?

from export2graphlan.

ZhangMin-123 avatar ZhangMin-123 commented on June 20, 2024

export2graphlan.py --skip_rows 1,2 -i taxonomy.tsv \

  --tree temp/merged_abundance.tree.txt \
  --annotation temp/merged_abundance.annot.txt \
  --most_abundant 1000 --abundance_threshold 20 --least_biomarkers 10 \
  --annotations 3,4 --external_annotations 7

Traceback (most recent call last):
File "/home/meta/miniconda2/envs/meta/bin/export2graphlan.py", line 768, in
main()
File "/home/meta/miniconda2/envs/meta/bin/export2graphlan.py", line 511, in main
lefse_input = DataMatrix(args.lefse_input, args)
File "/home/meta/miniconda2/envs/meta/bin/hclust2.py", line 149, in init
index_col = self.args.sname_row if self.args.sname_row > -1 else None
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 678, in parser_f
return _read(filepath_or_buffer, kwds)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 446, in _read
data = parser.read(nrows)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 1036, in read
ret = self._engine.read(nrows)
File "/home/meta/miniconda2/envs/meta/lib/python2.7/site-packages/pandas/io/parsers.py", line 1886, in read
values = data.pop(self.index_col[i])
IndexErrotaxonomy.xlsx

from export2graphlan.

Related Issues (4)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.