Report statistics of matched, unmatched reads about kmcp HOT 1 CLOSED

kmcp_linux_amd64.tar.gz

• kmcp search/merge:

  • append simple stats to the search result as comment lines, including the number of input and matched queries. e.g.,

      # input queries: 930254
      # matched queries: 923820
      # matched percentage: 99.3084%
    

• kmcp profile:

  • show stats of the number of input and matched queries in log. It would be helpful to hint at whether the reference genomes cover all microorganisms in the sample.

      20:00:55.295 [INFO] 99.3084% (923820/930254) reads matched
      20:00:55.295 [INFO] 100.0000% (923820/923820) matched reads belong to the 2 references in the profile
    

from kmcp.