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ddqc_r

dendritic-cell-bulk-rnaseq

Analyze bulk RNA-seq data from Li et al. 2016 to identify upregulated genes in activated dendritic cells.

ebaii

Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"

expimap_reproducibility

explorate_shell_script

fair_bioinfo

Démonstration d’outils de bioinfo dans le cadre d’un projet

formation_fair_2022

projet de formation au pratiques FAIR

free_r_tips

Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every Tuesday.

gbmatlas

genomics-analysis-pipelines

Pipeline codes for analyzing various genomics datasets based on MACS3

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

ibrap

single-cell RNA-sequencing integrative, benchmarking tool.

ibrap_codes

codes used to generate IBRAP publication data and figures.

imsb2020

Formation doctorale d'introduction à la modélisation statistique bayésienne

intro-ngs-sept-2017

Introduction to NGS workshop for the Bioinformatics Hub

libra

machine-learning-class

This project contains my code for the programming exercises in the Stanford University Machine Learning class on Coursera.

markdown-report

Interactive Markdown Report

mdx_lama2

Single-Nuclei RNASeq Analysis of Lama2-Dystrophic Mice muscle cells

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

ml-course-vib-2020

mlclass

Python code for Machine Learning course from Coursera

module-3-stat-r

Analyse statistique avec R

monocle2-rge-paper

Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)

muto_wilson_ncomm_2020

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

myrepo

Repository to test git/github setting

omic_sciences

pharyngeal_endoderm_development

picrust2_manuscript