Methods in Neuroimaging

A list of links and resources for my Methods in Neuroimaging Course (PSY 6930).

Introductory Resources

Principles of FMRI Lecture series Tor Wager's incomparable lecture series. Deeper into Physics / stats than we'll get.
fMRI 4 Newbies. Jody Culham's master class. I've borrowed heavily from this! If you need more, start here! If you want even more, check out her links.
Full Free course from UCL - just sign up with an account If you have the time, this course is everything we'll cover in full form!
Jeanie Mumford's tutorials mostly on analyses.
Enigma-U: Youtube tutorials of, well, everything!
Nancy Kanwisher the Human Brain course
MRI and physics overview. Nitty gritty physics details.
MRI Safety. A good overview of safety and procedures.
MRI Methods collection. From Jonathan Peelle; slightly out of date.
Collection of summer courses. Great lectures and articles on more advanced topics.
- In particular, MVPA from Martin Hebart
MVPA Meanderings. Blog on some methodological issues. Some more advanced tutorials.
Meta-resource on learning fMRI from Jonathan Peelle
Meta-resource on learning fMRI from Ausaf Farooqui
Meta-resource on learning fMRI from Chris Rorden See his courses in particular!
Allen Brain Map anatomy lessons and visualizations.
Anatomy text Check UF library for e-book and PDF access.
FMRI Text 1, Huettel et al. The authorative text
FMRI Text 2, Poldrack et al. Shorter and more focused on analysis
NeuroStars open forum for questions about analyses, software, debugging, etc.
Paper summary of MVPA

Twitter thread with code-focused links. MRI/fMRI focused, mostly based on computational tools.
Computer science overview. Broad computational toolkit.
Text on data science for neuroimaging. Computational skills, with a focus on neuroimaging. Also available as an in-print book.
Text on mathematical tools. More focus on the mathematical background of analyses.
Advanced methods tutorials from Mark Thornton
NITRC-Computing Environment

Andy's Brain book. One stop shop to learn hands-on fMRI preprocessing and analyses. A great starting point!
Andy's Brain blog. More advanced questions/tutorials.
NeuroMatch The incomparable!
- For example, see a re-analysis of Mick Bonner's data
University of Cambridge wiki & meta-resource
- In particular, check here for datasets!
Brainiak tutorials. Princeton Neuroscience trainings. Very hands on, mostly in Python.
Brainiak recommended learning computationally focused.
Human Connectome Project. For human connectome project specific stuff.
Jared Tanner (UF's own!) analysis pipeline.
BIDS format info on the neuroimaging data storage standard.
A list of BIDS converters. Tools and options to try for BIDS conversion.