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I'm a Senior Programming Analyst in the Institute for Genomics and Evolutionary Medicine at Temple University.

My primary interest is to build systems and applications that assist in both accelerating research in bioinformatics and have direct practical application in public health. This includes, but is not limited to, the use of tools, languages, and frameworks like Node.js, React, C++, Python, and numerous bioinformatics software as part of RNA-Seq pipelines, phylogenetic analysis, and user-friendly web applications.

In addition, I am responsible for the configuration and maintenance of high performance computing environments in datacenters at the San Diego Supercomputing Center and Temple University.

Steven Weaver's Projects

mmvc icon mmvc

Multinomial mixture variant caller

muttui icon muttui

MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets

neon-js icon neon-js

Javascript libraries that allow the applications to interact with NEO blockchain

occams icon occams

Open Source Clinical Content Analysis and Management System

oh-my-zsh icon oh-my-zsh

A community-driven framework for managing your zsh configuration. Includes 120+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, macports, etc), over 120 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

partis icon partis

B cell receptor annotation, partitioning, and simulation

phylocanvas icon phylocanvas

Phylogenetic tree visualisation for the web using HTML5, no plugins and no extra libraries.

phyphy icon phyphy

Python HyPhy: Facilitating HyPhy execution and parsing

powergrid icon powergrid

Calculating centrality for the maps in the Power Grid board game

projectrobo icon projectrobo

Automatically exported from code.google.com/p/projectrobo

qfilt icon qfilt

Simple and FAST barcode splitter for 454 FASTA files.

relax icon relax

Result visualization modules for the RELAX(ed) selection analysis

rust-bio icon rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

sars-cov-2 icon sars-cov-2

Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures

seqcomplexity icon seqcomplexity

Rust package that calculates sequence complexity from FastQ file

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