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:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
adegenet: a R package for the multivariate analysis of genetic markers
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
Slides for Algorithms for DNA Sequencing Coursera class
Interactive lessons in bioinformatics.
Script uses simply alignment and a hard threshold for deviation in order to detect changes in coverage
Applied Computational Genomics Course at UU: Spring 2017
Amplicon Sequencing Analysis Pipeline
A scalable bacterial genome assembly, annotation and analysis pipeline
A curated list of nextflow based pipelines
A pipeline for performing genome-wide association tests for bacterial genomes.
Calculates coverage stats for a .bam mapping file.
Mapped QC analysis program
A comparison of different Oxford Nanopore basecallers
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
BWK awk modified for biological data
repository for student workshop pages
Bioinformatics training resources
The Biological Observation Matrix (BIOM) Format Project
Biopieces is a bioinformatic framework of tools easily used and easily created.
an R package to biotype a community
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step
Light version of the upcoming blobtools package
Classifier for metagenomic sequences
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Gene cluster comparison figure generator
A tool for the identification of coincident (co-occurring and avoiding) genes in pangenomes.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.