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Pipeline for identifying core SNPs and building a phylogenetic tree
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
Data science scripts on COVID related things
cutadapt removes adapter sequences from sequencing reads
Accurate sample inference from amplicon data with single nucleotide resolution
The Leek group guide to data sharing
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Edinburgh Genomics MinION training 2016
ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!
Fantaxtic plots for phyloseq objects!
A tool to find sequencing data and metadata from public databases.
FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts
Eukaryotic Genome Annotation Pipeline
Scripts and reference files to type Group A Streptococcus
Genome Scripts used in fungal comparative genomics
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
Statistics course for JHU Genomic Data Science Sequence
A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
An implementation of the Grammar of Graphics in R
A very quick demo of Git for beginners
generalized linear mixed models with AD Model Builder
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
Highways Enumerated by Recombination Observations
Collection of R functions used in the Hochwagen Lab
scripts to automate illumina secondary analysis pipeline
extract long read subsequences from a pair of primers
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.