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Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

📦 Some tools are available via Bioconda :

🧬 🚀 seqfu ⛰️ bamtocov 🖌️ dadaist2 🛠️ qax
GitHub Repo stars Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

📖 I use GitHub also for training material

📓 microbiome bioinformatics 🧔 Personal website 💻 bash training 🎥 Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

Andrea Telatin's Projects

16s-region icon 16s-region

Align sequences to detect the variable regions they span

anvio icon anvio

An analysis and visualization platform for 'omics data

bamtocov icon bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

bart icon bart

bacterial read typer :dna: :skateboard: :microbe:

bio-tradis icon bio-tradis

A set of tools to analyse the output from TraDIS analyses

bioinfo icon bioinfo

Misc scripts for routine bioinformatics tasks. Plus some Perl modules.

bionumpy icon bionumpy

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

bohra icon bohra

A pipeline for bioinformatics analysis of bacterial genomes

bracken icon bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

canopy2 icon canopy2

canopy clustering of gene catalogues

captus icon captus

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

cleanup icon cleanup

Nextflow pipeline to preprocess metagenomics reads

climb-docs icon climb-docs

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

climb_bash icon climb_bash

CLIMB BIG DATA — Bash for bioinformatics intoductory course, Oct 5-6 2020

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