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Hello! πŸ‘‹

I'm a bioinformatician working on microbial (meta)genomics :DNA:

πŸ€– I like tinkering with nextflow:

πŸ“¦ Some tools are available via Bioconda :

🧬 πŸš€ seqfu ⛰️ bamtocov πŸ–ŒοΈ dadaist2 πŸ› οΈ qax
GitHub Repo stars Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

πŸ“– I use GitHub also for training material

πŸ““ microbiome bioinformatics πŸ§” Personal website πŸ’» bash training πŸŽ₯ Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

Andrea Telatin's Projects

covtobed icon covtobed

β›° covtobed | Convert the coverage track from a BAM file into a BED file

docs-theme icon docs-theme

Just another documentation theme compatible with GitHub Pages

fasten icon fasten

:construction_worker: Fasten toolkit, for streaming operations on fastq files

fastx-abi icon fastx-abi

Perl module to convert Sanger traces (chromatograms) to FASTQ

fastx-reader icon fastx-reader

[FASTX::Reader] Perl module to parse FASTQ files, without depending on BioPerl

feeling icon feeling

Β»Feeling ResponsiveΒ« is a free flexible theme for Jekyll built on Foundation framework. You can use it for your company site, as a portfolio or as a blog.

ffq icon ffq

A tool to find sequencing data and metadata from public databases.

gan icon gan

πŸ“œ the Great Automatic Nomenclator β€” The Next Million Names for Archaea and Bacteria

generative-ai-for-beginners icon generative-ai-for-beginners

18 Lessons, Get Started Building with Generative AI πŸ”— https://microsoft.github.io/generative-ai-for-beginners/

gmh-workshops icon gmh-workshops

Bioinformatics training - Gut Microbes and Health program at the Quadram Institute Bioscience

graphbin icon graphbin

GraphBin: Refined binning of metagenomic contigs using assembly graphs

group icon group

A beautiful, simple, clean, and responsive Jekyll theme for academics

hmmufotu icon hmmufotu

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

ioheat icon ioheat

IoHeat - your personal "medium heating" butler

irida-linker icon irida-linker

A command-line tool for exporting data from IRIDA to the command line

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