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followers: 132.0 following: 65.0 repos: 159.0 gists: 90.0

Name: Andrea Telatin

Type: User

Company: Quadram Institute Bioscience

Bio: Bioinformatician @quadram-institute-bioscience

Twitter: telatin

Location: Norwich, UK

Blog: https://telatin.github.io/

Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

📦 Some tools are available via Bioconda :

🧬 🚀 seqfu	⛰️ bamtocov	🖌️ dadaist2	🛠️ qax
Fast toolkit for FASTX manipulation and inspection	to extract coverage tracks from BAM files	to analyze 16s/ITS from reads to R	utilities for Qiime2 artifacts

📖 I use GitHub also for training material

📓 microbiome bioinformatics	🧔 Personal website	💻 bash training	🎥 Companion videos
Some tutorials	A small blog	Toy files to practice Bash	A Youtube channel

I'm using Mastodon

Andrea Telatin's Projects

mergekit

metadecoder

An algorithm for clustering metagenomic sequences.

metaphage

metaprokka

🧫 ♊ MetaProkka | A fork for Phages and Metagenomes

mf-docs

MetaPhage documentation draft

microbiome-bioinformatics

Jekyll Template - Mediumish

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

misclas

Misassembly Classification

ml-workshop-2023

Machine Learning with Python

mlst-hash-template

This is a template for any new hash-based MLST database

mmb_dtp

mmbdtp

website for the bioinformatics training

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

mp-lite

multiplex_blast_search

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nextflow-example

A simple DSL2 workflow: tutorial

nextflow.py

Python wrapper around Nextflow.

nextseq500-tools

Tools to deal with Illumina NextSeq500 sequences

nf-channel-error

nft

nextflow fungible template

nim-action

Nim compiler action

nim-for-bioinformatics

Notes on the Nim programming language, with specific examples for bioinformatic applications

nim-stuff

Exploring NIM

nimreadfq

A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser

ocms_16s

paired-sam-test

A test of SAM flags using paired end reads

perl-uk-vehicle

Perl module for querying the MOT history of a UK-registered vehicle

phanta

Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

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