I'm a bioinformatician working on microbial (meta)genomics :DNA:
๐ค I like tinkering with nextflow:
๐ฆ Some tools are available via Bioconda :
๐งฌ ๐ seqfu | โฐ๏ธ bamtocov | ๐๏ธ dadaist2 | ๐ ๏ธ qax |
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Fast toolkit for FASTX manipulation and inspection | to extract coverage tracks from BAM files | to analyze 16s/ITS from reads to R | utilities for Qiime2 artifacts |
๐ I use GitHub also for training material
๐ microbiome bioinformatics | ๐ง Personal website | ๐ป bash training | ๐ฅ Companion videos |
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Some tutorials | A small blog | Toy files to practice Bash | A Youtube channel |
I'm using Mastodon