Topic: umls Goto Github
Some thing interesting about umls
Some thing interesting about umls
umls,Rare disease identification from free-text clinical notes with ontologies and weak supervision
User: acadtags
umls,Neural Network models to map mention of a text to corresponding entity in the Knowledge Base
User: agankur21
umls,ðŽ Biohack 3-5 of March, 2017
User: akarazeev
Home Page: http://biohack.ru
umls,Sytora is a multilingual symptom-disease classification app. Translation is managed through the UMLS coding standard.
User: anaymalpani
Home Page: https://anaymalpani.github.io/sytora/
umls,This repository is dedicated to development of Python scripts which use API to UMLS MetaMap to map semantics of common data elemnts to UMLS and NCI concepts
Organization: cbiit
umls,Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
Organization: cogstack
umls,Medical Concept Annotation Tool
Organization: cogstack
umls,A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
Organization: cogstack
umls,Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
User: cthoyt
Home Page: https://umls-downloader.readthedocs.io
umls,UMLS Medical Entity Linking. Adaptation of MedLinker (ECIR 2020) for the Social Domain.
User: danlou
umls,:heartpulse: npm package for accessing UMLS REST APIs (unofficial)
User: dermatologist
Home Page: https://canehealth.com
umls,Build a medical knowledge graph based on Unified Language Medical System (UMLS)
User: dhchenx
umls,Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
User: dhchenx
Home Page: https://pypi.org/project/umls-similarity/
umls,CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
User: ganjinzero
Home Page: https://www.sciencedirect.com/science/article/pii/S1532046421003129
umls,System for Medical Concept Extraction and Linking
Organization: georgetown-ir-lab
umls,Medical Relations and Entities Extraction
User: kbogas
umls,A sophisticated smart symptom search engine
User: leanderme
Home Page: http://sytora.com
umls,A near real-time named-entity recognizer
Organization: lhncbc
Home Page: https://metamap.nlm.nih.gov/MetaMapLite.shtml
umls,A minimal implementation of the MetaMapLite named entity recognizer in Python,
Organization: lhncbc
umls,Toolkit for a learning health system
Organization: medkit-lib
Home Page: https://medkit.readthedocs.io
umls,Classify your health/medical/life sciences search terms
Organization: ncbi-codeathons
umls,Classify web visitor queries so you can chart, and respond to, trends in information seeking
Organization: ncbi-hackathons
umls,Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy
User: nguyendat-bit
umls,UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT or ICD-10 codes using the UMLS Metathesaurus. Supports exact match, broad relations, and parent-child hierarchy mapping methods.
Organization: nlpie-research
umls,Python client for the UMLS REST API https://documentation.uts.nlm.nih.gov/rest/home.html
Organization: odwyersoftware
umls,Radiology Objects in COntext (ROCO): A Multimodal Image Dataset
User: razorx89
umls,An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL and MariaDB all covered within this repo. Next the UMLS subset which is stored in a relational DB will be queried, modeled and lastly loaded into a defined Neo4j label property graph. Lastly, Neo4j database containing UMLS 2021AB subset in schema promoting intuitive analysis and rich visualization will become the central datastore for analysis. The datastore contains ~5 million distinct nodes & >40 million distinct relationships (edges). Currently, Neo4j is running via Docker but deployment options are NOT limited to Docker. If choosing to deploy via Neo4j Aura, server, Neo4j Desktop, VM etc... Please note and be aware of the specific volumes and environment variables specified within this repository (docker run). The ability for the loaded Neo4j Graph to interact with RDF data (i.e. import/export RDF data to and from Neo4j) may not be possible via all Neo4j deployment avenues (i.e. Neo4j Aura currently does not support RDF integration that is demonstrated in this repository).
User: rcolinp
umls,:hospital: Clinical NER with UMLS lookup :hospital:
User: ryandsilva
umls,Python Wrapper for MetaMap
User: smujjiga
umls,Weakly supervised medical named entity classification
Organization: som-shahlab
umls,Sparrow AI - API for disease diagnostics
Organization: sparrow-platform
Home Page: https://hub.docker.com/r/jaylohokare/diseases-predictor
umls,MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
User: suamin
Home Page: https://aclanthology.org/2022.coling-1.198
umls,TREC'15 CDS Competition: WSU-IR at TREC 2015 Clinical Decision Support Track: Joint Weighting of Explicit and Latent Medical Query Concepts from Diverse Sources [code]
Organization: teanalab
umls,OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers
Organization: thepanacealab
umls,Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.
Organization: umcu
umls,Load UMLS Metathesaurus Files into a SQL Server Database
User: vcastro
umls,A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.
Organization: wenglab-informaticsresearch
umls,[Neurocomputing 2023] Relational Graph Transformer for Knowledge Graph Representation
Organization: zjunlp
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