tshauck / gcgc Goto Github PK
View Code? Open in Web Editor NEWAn ML-feature processing library for biological sequences.
License: MIT License
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phiwegergcgc's Issues
Issue with runing the QuickStart
- GCGC version: 0.12.1
- Python version: 3.6.9
- Operating System: Ubuntu 18.04
Description
I am trying to replicate the example in the QuickStart...
from gcgc import KmerTokenizer
kmer_tokenizer = KmerTokenizer(alphabet="unambiguous_dna")
encoded = kmer_tokenizer.encode("ATCG")
print(encoded)
What I Did
I installed the package and run the following only to get this error:
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-9-12027d1b4fb4> in <module>
1 from gcgc import KmerTokenizer
2
----> 3 kmer_tokenizer = KmerTokenizer(alphabet="unambiguous_dna")
4 encoded = kmer_tokenizer.encode("ATCG")
5 print(encoded)
TypeError: __init__() got an unexpected keyword argument 'alphabet'
I would appreciate your help with this.
thanks!
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