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Comments (5)

urmi-21 avatar urmi-21 commented on August 22, 2024

Thanks, can you provide more details about your conda version, OS and command used?

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lijing28101 avatar lijing28101 commented on August 22, 2024
Conda version: conda 4.9.2

Install command line: conda install -c bioconda orfipy

OS version: 
NAME="Red Hat Enterprise Linux Server"
VERSION="7.9 (Maipo)"
ID="rhel"
ID_LIKE="fedora"

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urmi-21 avatar urmi-21 commented on August 22, 2024

I am also seeing this on mac

conda create -n orfipy_conda -c bioconda orfipy
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: / 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                           

UnsatisfiableError: 

This is also failing

conda create -n orfipy_conda python=3.8
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/usingh/anaconda3/envs/orfipy_conda

  added / updated specs:
    - python=3.8


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2021.1.19  |       hecd8cb5_0         121 KB
    readline-8.1               |       h9ed2024_0         333 KB
    setuptools-52.0.0          |   py38hecd8cb5_0         714 KB
    ------------------------------------------------------------
                                           Total:         1.1 MB

The following NEW packages will be INSTALLED:

  ca-certificates    pkgs/main/osx-64::ca-certificates-2021.1.19-hecd8cb5_0
  certifi            pkgs/main/osx-64::certifi-2020.12.5-py38hecd8cb5_0
  libcxx             pkgs/main/osx-64::libcxx-10.0.0-1
  libedit            pkgs/main/osx-64::libedit-3.1.20191231-h1de35cc_1
  libffi             pkgs/main/osx-64::libffi-3.3-hb1e8313_2
  ncurses            pkgs/main/osx-64::ncurses-6.2-h0a44026_1
  openssl            pkgs/main/osx-64::openssl-1.1.1i-h9ed2024_0
  pip                pkgs/main/osx-64::pip-20.3.3-py38hecd8cb5_0
  python             pkgs/main/osx-64::python-3.8.5-h26836e1_1
  readline           pkgs/main/osx-64::readline-8.1-h9ed2024_0
  setuptools         pkgs/main/osx-64::setuptools-52.0.0-py38hecd8cb5_0
  sqlite             pkgs/main/osx-64::sqlite-3.33.0-hffcf06c_0
  tk                 pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
  wheel              pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  zlib               pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3


Proceed ([y]/n)? y


Downloading and Extracting Packages
ca-certificates-2021 | 121 KB    | ###################################################################################################################################### | 100% 
readline-8.1         | 333 KB    | ###################################################################################################################################### | 100% 
setuptools-52.0.0    | 714 KB    | ###################################################################################################################################### | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate orfipy_conda
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base)  usingh$ conda activate orfipy_conda
(orfipy_conda)  usingh$ conda install -c bioconda orfipy
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \ 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                           

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - orfipy -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.9,<3.10.0a0|3.4.*']

Your python: python=3.8

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

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dpryan79 avatar dpryan79 commented on August 22, 2024

It appears you either don't have conda-forge in your channel list or it's not the highest priority channel. Please run the following:

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

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urmi-21 avatar urmi-21 commented on August 22, 2024

Thanks @dpryan79 your solution works.

from orfipy.

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