Utilities to populate LED database
This repository is highly specific to the lab
- Clone the repos
- modify login/password for LED connection in import_vcf.pl
- put vcf files and corresponding text files (see import_batch_led.sh -h for format details)
- run import_batch_led.sh
- Example
bash splitVCF4LED.sh -i /RS_IURC/data/MobiDL/captainAchab/Example/ND/LED/LED-19-10-2018/ATX1289.final.vcf -s .final
- to generate a sample file with custom info
bash splitVCF4LED.sh -i /RS_IURC/data/MobiDL/captainAchab/Example/ND/LED/LED-19-10-2018/ATX1289.final.vcf -af -f S1376 -e medexome -t SENSORINEURAL