This package contains the workflow Bash and R scripts used in the manuscript to analyze demultiplexed SE reads from a ddRADseq experiment in Quercus suber, Quercus ilex, and their hybrids. Please, see the details in:

López de Heredia U, Mora-Márquez F, Goicoechea PG, Guillardín-Calvo L, Simeone MC and Soto Á (2020) ddRAD Sequencing-Based Identification of Genomic Boundaries and Permeability in Quercus ilex and Q. suber Hybrids. Front. Plant Sci. 11:564414. doi: 10.3389/fpls.2020.564414

Refer to the README.pdf in the "Package" folder for further information of the workflow and Bash and R scripts (https://github.com/GGFHF/ddRAD-CORK-HYB/blob/master/Package/README.pdf).

This software has been developed by:

GI Genética, Fisiología e Historia Forestal
Dpto. Sistemas y Recursos Naturales
ETSI Montes, Forestal y del Medio Natural
Universidad Politécnica de Madrid

https://github.com/ggfhf/