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regularized_models_demo_voigts_glm

Demonstrates a few simple applications of L2 regularization

release

Binary releases of Vaa3D and related software components

remocolab

remocolab is a Python module to allow remote access to Google Colaboratory using SSH or TurboVNC.

remote-z-scanning-abcd-optics

ABCD optics analysis for remote z-scanning using Mathematica

repulsive-autoencoder

Variations on the Variational Autoencoder

rising

Provides everything needed for high performance data loading and augmentation in pytorch.

rl-adventure

Pytorch Implementation of DQN / DDQN / Prioritized replay/ noisy networks/ distributional values/ Rainbow/ hierarchical RL

roimaster_voigts_roi_editor

ROI editor for neural imaging data

rotating-2p-image-correction_voigts

code for Voigts & Harnett, Somatic and dendritic encoding of spatial variables in retrosplenial cortex differs during 2-D navigation

rustnn

A neural network crate

s1-analysis_suite2p

Code to analyse calcium traces generated by Suite2P and synchronise with behaviour data generated by DLC.

s2p_on_o2_suite2p

a system for running suite2p on o2

sacramento-brain_model_backprop

Implementation of the paper "Dendritic cortical microcircuits approximate the backpropagation algorithm" - João Sacramento, Rui Ponte Costa, Yoshua Bengio, Walter Senn

scikit-learn

scikit-learn: machine learning in Python

seaborn

Statistical data visualization in Python

segmentation-networks-benchmark

Evaluation framework for testing segmentation networks in Keras

segmentation_models.pytorch

Segmentation models with pretrained backbones. PyTorch.

semantic-segmentation-suite

Semantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!

seudo

shallow-unet-neuron-segmentation_suns

sigmoidnumbers

Sigmoid Numbers for Julia

skeletopyze

Simple python module for volume skeletonization.

slicereg

A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

slm-tutorial_spatial_light_modulation

snippets-data-analysis

Code snippets for data analysis in python

sonnet

TensorFlow-based neural network library

spectralsegmentation

Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences

spike-based-hybrid-plasticity-network

spikefinder-adaptive-derivative

A simple model-based algorithm for the spikefinder competition

spikefinder-elephant

Keras network for spike detection from calcium traces