Name: Wisam Reid
Type: User
Bio: (1) PhD Candidate, Harvard Medical School (2023), SHBT
(2) MA, Stanford University (2017), Music, Science, & Technology
(3) BS, UC Berkeley (2014), EECS
Location: Harvard/MIT
Blog: http://wisamreid.com
Wisam Reid's Projects
A Bayesian cruise controller. A minimal model of velocity regulation for a block on a frictionless surface.
Python tools for big data
Some analysis associated with the BigNeuron hackathon at Imperial College Jan 2016
Tools for distributed alignment of massive images
Biologically Plausible Machine Learning Experiments
Neurons learn by predicting future activity
Bio-Formats image file format to raw format converter
A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)
A Blender addon for visualizing your NEURON model, with customizable voltage traces.
Brain Modeling Toolkit
A solution system to the neurofinder challenge
A Brain MRI segmentation neural network that follows the U-Net archtecture ( https://lmb.informatik.uni-freiburg.de/people/ronneber/u-net/ ), and uses Brain MRI LGG dataset from Kaggle ( https://www.kaggle.com/mateuszbuda/lgg-mri-segmentation)
list of brain networks ready to be downloaded for your brainhacking pleasure
U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI
a python based software for visualization of neuroanatomical and morphological data.
Spiral Brain Dynamics
Set of functions, scripts and notebooks used in the brain-wide auditory processing project
Paper Code: Single-phase deep learning in cortico-cortical networks
A toolbox for inferring spikes from calcium traces.
NEURON model of CA1 with variable AIS (Hatch model)
Application of graph theory to summarize network behavior of neurons recorded using calcium fluorescence imaging.
Complete Matlab pipeline for large scale calcium imaging data analysis
Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.