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ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

opengene.jl

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

opsel.jl

Efficient optimal selection for tree breeding

ordinalgwas

有序分类变量的GWAS--基于MASS包的polr函数，使用有序逻辑回归using ordered logistic regression

ordinalgwas.jl

Genome-wide association studies (GWAS) for ordered categorical phenotypes using proportional odds model or ordred Probit model.

outcrossseq

pannagram

多基因组比对

past

Pathway Association Study Tool (PAST)

peer

寻找影响基因表达量的影响因子，用于TWAS分析中

permgwas

Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions

piblup

PIBLUP随机回归一步法GS

plant-lncrna-pipline

植物LncRNA分析工具

pliman

Tools for Plant Image Analysis

plosone_mvgblup_paper

All the R codes and data used in the paper "Inclusion of Dominance Effects in the Multivariate GBLUP Model" can be accessed in this repository

plotlyman

Create Manhattan plots using Plotly

pophelper

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

predcrossvar

Complete set of functions for the prediction of additive and dominance genetic variances and co-variances among full-siblings, based on parents.

pumpkin-book

《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book

pyeasyga

A simple and easy-to-use implementation of a Genetic Algorithm library in Python

qpcr-pipeline

Auto-analysis for Real-Time PCR (qPCR) data

quack

A FASTQ quality assessment tool

r_genomic_prediction_scripts

r_oop

:art: R语言面向对象编程教程 https://dataxujing.github.io/R_oop/

rdataanalytics

Data Analytics with R, instructed by Xinbo Ai, at Beijing University of Posts and Telecommunications

rinat

物种分布查询

rmvp

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

rnaglass

Identify and quantify mobile mRNAs in grafted plants

rrm-and-famm-asreml-two-step

随机回归模型在纵向性状中应用 contains the R codes to model the genotype by harvest interaction using random regression models (RRM) and Factor Analytic Mixed Model (FAMM)

rtassel

R front-end for TASSEL

rtm-gwas

An innovative GWAS procedure for studies on germplasm population and plant breeding