# conert hdf5 to VCF format
# Only for a special format, don't try in your own data.
# h5ToVCF INPUT.hdf5 OUPUT.vcf.gz
h5ToVCF impute_runner_chr4.hdf5 test_chr4.vcf.gz
# convert to pgen
plink2 --vcf test_chr4.vcf.gz dosage=DS --make-pgen --out test_chr4
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